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Species belonging to selected taxon:
Danio rerio
,
Oryzias latipes
,
Salmo salar
,
Ictalurus punctatus
,
Oncorhynchus mykiss
,
Gasterosteus aculeatus
,
Pimephales promelas
,
Gadus morhua
,
Ictalurus furcatus
,
Oreochromis niloticus
,
Fundulus heteroclitus
,
Sparus aurata
,
Dicentrarchus labrax
,
Dissostichus mawsoni
,
Osmerus mordax
,
Anoplopoma fimbria
,
Cyprinus carpio
,
Esox lucius
,
Takifugu rubripes
,
Sebastes caurinus
,
Misgurnus anguillicaudatus
,
Perca flavescens
,
Paralabidochromis chilotes
,
Hippoglossus hippoglossus
,
Rutilus rutilus
,
Poecilia reticulata
,
Oncorhynchus tshawytscha
,
Paralichthys olivaceus
,
Psetta maxima
,
Lates calcarifer
,
Oncorhynchus nerka
,
Sebastes rastrelliger
,
Thymallus thymallus
,
Solea senegalensis
,
Coregonus clupeaformis
,
Thunnus thynnus
,
Cynoglossus semilaevis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST006837
species:
Salmo salar
miRNA family:
miR-1952
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTCCACCATCCTTCTGGTCA
miRNA*
ACTGGAAGGAGCTGTGGATAGA
mismatches:
5
bulges:
1
View larger
pre-miRNA
AAGTGCCAGTCGG
ACTGGAAGGAGCTGTGGATAGA
AGATGCCTTCTGGCGGTTCCTCT
TCTCCACCATCCTTCTGGTCA
TCATGTTCCT
dot-bracket secondary structure
............(
((((((((((...(((((.(((
.((.(((....)))...)).)))
..)))))..))))))))))).
..........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q8BKU8|TM87B_MOUSE: 0.00000002
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record