miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006845
species: Salmo salar
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGTCCCCTTCAGGCGGCT

miRNA*
 CTGGTCTGGCGAAACCAAGAC

mismatches: 4
bulges: 2
View larger
pre-miRNA
 TCTCCCTCCCTCTCGCTTTCCCTCTCGTCCTGAACTGCACGCCTTGATGTGGCTGGTCTGGCGAAACCAAGACAGGTGTTTTAGTGAGGTTTGGTCCCCT
TCAGGCGGCTACTGCGTCGTGAAGTCAGTCATGAGACATCCACAGCGGGATTGACAGAT

dot-bracket secondary structure
(((...((..(((((((.....((((((.((((.((.((((...((..(((((((.(((((....((((((.((..........))...)))))).....
))))))))))))..)).)))).))))))..)))))).......)))))))..)).))).


SIMILARITIES
miRBase dre-mir-133b: 0.00000000003

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-133: 0.00000000000001		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




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