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Species belonging to selected taxon:
Salmo salar
ABOUT THIS RECORD
ID:
MNEST006845
species:
Salmo salar
miRNA family:
mir-133
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTTGGTCCCCTTCAGGCGGCT
miRNA*
CTGGTCTGGCGAAACCAAGAC
mismatches:
4
bulges:
2
View larger
pre-miRNA
TCTCCCTCCCTCTCGCTTTCCCTCTCGTCCTGAACTGCACGCCTTGATGTGG
CTGGTCTGGCGAAACCAAGAC
AGGTGTTTTAGTGAGG
TTTGGTCCCCT
TCAGGCGGCT
ACTGCGTCGTGAAGTCAGTCATGAGACATCCACAGCGGGATTGACAGAT
dot-bracket secondary structure
(((...((..(((((((.....((((((.((((.((.((((...((..((((
(((.(((((....((((((.(
(..........))...
)))))).....
))))))))))
))..)).)))).))))))..)))))).......)))))))..)).))).
SIMILARITIES
miRBase
dre-mir-133b
:
0.00000000003
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-133: 0.00000000000001
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record