ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-1281
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCCTCCTCCTCTCCCTCAT miRNA* GAGGGAGGTGGAGGGGGAGAGG mismatches: 4 bulges: 1 |
pre-miRNA
CGGCAGATAAGAGAGGGAGGTGGAGGGGGAGAGGAGCTAGATGAAGAGGTGCCCTCCTCAGCCTCACCTCCAGAGCAAGAGCTAGACGATGAAGAGATGG
CAAGAGTTAGGGAGGAGGCAGAGAGGAGTGTGCACAACCTGAACATAGGCGGCGGAGGGTATTACCTCTCTTTCTCCTGCCTCCTCCTCTCCCTCATTTA
TCTTGT
dot-bracket secondary structure
....(((((((.((((((((.((((((((.((((((((..(((.((..((((.((((((.((((..(((((..(((....((((.............)))
)....)))..)))))))))...))))))...))))...))...))).)))...(((((......)))))..)))))...)))))))))))))))).))))
)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGCAGATAAGAGAGGGAGGTGGAGGGGGAGAGGAGCTAGATGAAGAGGTGCCCTCCTCAGCCTCACCTCCAGAGCAAGAGCTAGACGATGAAGAGATGG
CAAGAGTTAGGGAGGAGGCAGAGAGGAGTGTGCACAACCTGAACATAGGCGGCGGAGGGTATTACCTCTCTTTCTCCTGCCTCCTCCTCTCCCTCATTTA
TCTTGT
dot-bracket secondary structure
....(((((((.((((((((.((((((((.((((((((..(((.((..((((.((((((.((((..(((((..(((....((((.............)))
)....)))..)))))))))...))))))...))))...))...))).)))...(((((......)))))..)))))...)))))))))))))))).))))
)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
