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Species belonging to selected taxon:
Salmo salar
,
Oncorhynchus mykiss
,
Osmerus mordax
,
Oncorhynchus tshawytscha
,
Oncorhynchus nerka
,
Thymallus thymallus
,
Coregonus clupeaformis
,
Salvelinus fontinalis
ABOUT THIS RECORD
ID:
MNEST006846
species:
Salmo salar
miRNA family:
mir-1281
source:
miRNEST
Taxonomy by NCBI:
Salmo salar
Salmo
Salmoninae
Salmonidae
Salmonoidei
Salmoniformes
Protacanthopterygii
Euteleostei
Clupeocephala
Elopocephala
Teleostei
Neopterygii
Actinopteri
Actinopterygii
Euteleostomi
Teleostomi
Gnathostomata
Vertebrata
Craniata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGCCTCCTCCTCTCCCTCAT
miRNA*
GAGGGAGGTGGAGGGGGAGAGG
mismatches:
4
bulges:
1
View larger
pre-miRNA
CGGCAGATAAGA
GAGGGAGGTGGAGGGGGAGAGG
AGCTAGATGAAGAGGTGCCCTCCTCAGCCTCACCTCCAGAGCAAGAGCTAGACGATGAAGAGATGG
CAAGAGTTAGGGAGGAGGCAGAGAGGAGTGTGCACAACCTGAACATAGGCGGCGGAGGGTATTACCTCTCTTTCTC
CTGCCTCCTCCTCTCCCTCAT
TTA
TCTTGT
dot-bracket secondary structure
....(((((((.
((((((((.((((((((.((((
((((..(((.((..((((.((((((.((((..(((((..(((....((((.............)))
)....)))..)))))))))...))))))...))))...))...))).)))...(((((......)))))..)))))
...)))))))))))))))).)
)))
)))...
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record