ABOUT THIS RECORDspecies: Salmo salar
miRNA family: miR-1692
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAGCTCAGTTGGTAGAGCA miRNA* CTTTACTGTGAGCTGCATG mismatches: 2 bulges: 2 |
pre-miRNA
CTGATACTCTAGTAAACATGGGCTTTACTGTGAGCTGCATGCTGCTTCTCAGGGCTTCTCTCAGGCAGCCAGACGCACTGGTCAAGAATCCACAGAATGC
ACATAATGATCGGCACTGTCAAACTTAAATGTAGCTCAGTTGGTAGAGCATGGTGTTTGCAACGCATGG
dot-bracket secondary structure
...........((((((((..(((((((((.((((((((((((((((...((((...)))).)))))))..((((..(((((((................
......)))))))...))))........)))))))))...)))))))))...)))))))).........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGATACTCTAGTAAACATGGGCTTTACTGTGAGCTGCATGCTGCTTCTCAGGGCTTCTCTCAGGCAGCCAGACGCACTGGTCAAGAATCCACAGAATGC
ACATAATGATCGGCACTGTCAAACTTAAATGTAGCTCAGTTGGTAGAGCATGGTGTTTGCAACGCATGG
dot-bracket secondary structure
...........((((((((..(((((((((.((((((((((((((((...((((...)))).)))))))..((((..(((((((................
......)))))))...))))........)))))))))...)))))))))...)))))))).........
SIMILARITIES| miRBase no hits PMRD tae-miR2005: 0.0005 microPC no hits | UniProt no hits RFAM tRNA: 0.0000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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