miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Oryzias latipes, Salmo salar, Oncorhynchus mykiss, Gasterosteus aculeatus, Gadus morhua, Oreochromis niloticus, Fundulus heteroclitus, Sparus aurata, Dicentrarchus labrax, Dissostichus mawsoni, Osmerus mordax, Anoplopoma fimbria, Esox lucius, Takifugu rubripes, Sebastes caurinus, Perca flavescens, Paralabidochromis chilotes, Hippoglossus hippoglossus, Poecilia reticulata, Oncorhynchus tshawytscha, Paralichthys olivaceus, Psetta maxima, Lates calcarifer, Oncorhynchus nerka, Sebastes rastrelliger, Thymallus thymallus, Solea senegalensis, Coregonus clupeaformis, Thunnus thynnus, Cynoglossus semilaevis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006858
species: Salmo salar
miRNA family: miR-1692
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTAGCTCAGTTGGTAGAGCA

miRNA*
 CTTTACTGTGAGCTGCATG

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CTGATACTCTAGTAAACATGGGCTTTACTGTGAGCTGCATGCTGCTTCTCAGGGCTTCTCTCAGGCAGCCAGACGCACTGGTCAAGAATCCACAGAATGC
ACATAATGATCGGCACTGTCAAACTTAAATGTAGCTCAGTTGGTAGAGCATGGTGTTTGCAACGCATGG

dot-bracket secondary structure
...........((((((((..(((((((((.((((((((((((((((...((((...)))).)))))))..((((..(((((((................
......)))))))...))))........)))))))))...)))))))))...)))))))).........


SIMILARITIES
miRBase no hits

PMRD tae-miR2005: 0.0005

microPC no hits		UniProt no hits

RFAM tRNA: 0.0000000007		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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