ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-133
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCT miRNA* CTGGTAAAAAGGAACCAAATC mismatches: 4 bulges: 0 |
pre-miRNA
ACACCTAATGCTTTGCTAAAGCTGGTAAAAAGGAACCAAATCACCTCTTGAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATGA
dot-bracket secondary structure
.....(((.((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)).)))....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACACCTAATGCTTTGCTAAAGCTGGTAAAAAGGAACCAAATCACCTCTTGAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCTTTGATGA
dot-bracket secondary structure
.....(((.((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)).)))....
SIMILARITIES| miRBase dre-mir-133a-1: 4e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 4e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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