miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka, Thymallus thymallus, Coregonus clupeaformis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006868
species: Salmo salar
miRNA family: miR-133a
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCTGGTAAAATGGAACCAAAT

miRNA*
 TTGGTCCCCTTCAACCAGCTG

mismatches: 4
bulges: 0
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pre-miRNA
 CACCAAAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCAC

dot-bracket secondary structure
.......(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))......


SIMILARITIES
miRBase gga-mir-133a-2: 8e-45

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-133: 8e-36		most similar mature miRNAs

Identical with: tgu-mir-133-3 from miRBase (MNEST026464)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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