ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-133
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGTCCCCTTCAACCAGCT miRNA* CTGGTAAAATGGAACCAAATC mismatches: 4 bulges: 0 |
pre-miRNA
CACCAAAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCAC
dot-bracket secondary structure
.......(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACCAAAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCAC
dot-bracket secondary structure
.......(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))......
SIMILARITIES| miRBase gga-mir-133a-2: 8e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 8e-36 | most similar mature miRNAs |
Identical with: tgu-mir-133-3 from miRBase (MNEST026464) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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