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Species belonging to selected taxon:

Salmo salar



ABOUT THIS RECORD

ID: MNEST006869
species: Salmo salar
miRNA family: mir-133
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGTCCCCTTCAACCAGCT

miRNA*
CTGGTAAAATGGAACCAAATC

mismatches: 4
bulges: 0

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pre-miRNA
CACCAAAAATGCTTTGCTAAAGCTGGTAAAATGGAACCAAATCAACTGTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTGTGCATTGATCAC

dot-bracket secondary structure
.......(((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...)))))......


SIMILARITIES
miRBase gga-mir-133a-2: 8e-45

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-133: 8e-36
most similar mature miRNAs

Identical with: tgu-mir-133-3 from miRBase (MNEST026464)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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