ABOUT THIS RECORDspecies: Salmo salar
miRNA family: mir-129
source: miRNEST
Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCCCTTACCCCAAAAAGCA miRNA* TTTTTGCGGTCTGGGCTTGC mismatches: 4 bulges: 0 |
pre-miRNA
GTGATGTGGATCTGGACCGATAGATTGTCCGTCACGAATCTTTTTGCGGTCTGGGCTTGCTGTTCATAAATATCAGTCTGGGAAGCCCTTACCCCAAAAA
GCATTTGTGGAGGACTCAGTCGCCGAATTGAATGTATTGT
dot-bracket secondary structure
........(((.(((...(((.((..((((.(((((((((((((((.(((..((((((.((..................)).))))))..))).))))))
).)))))))).)))))).))).))).)))...........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTGATGTGGATCTGGACCGATAGATTGTCCGTCACGAATCTTTTTGCGGTCTGGGCTTGCTGTTCATAAATATCAGTCTGGGAAGCCCTTACCCCAAAAA
GCATTTGTGGAGGACTCAGTCGCCGAATTGAATGTATTGT
dot-bracket secondary structure
........(((.(((...(((.((..((((.(((((((((((((((.(((..((((((.((..................)).))))))..))).))))))
).)))))))).)))))).))).))).)))...........
SIMILARITIES| miRBase fru-mir-129-1: 9e-24 PMRD no hits microPC no hits | UniProt no hits RFAM mir-129: 1e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
