miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka, Thymallus thymallus, Coregonus clupeaformis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST006883
species: Salmo salar
miRNA family: mir-129
source: miRNEST

Taxonomy by NCBI:
Salmo salar Salmo Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCCCTTACCCCAAAAAGCA

miRNA*
TTTTTGCGGTCTGGGCTTGC

mismatches: 4
bulges: 0

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pre-miRNA
GTGATGTGGATCTGGACCGATAGATTGTCCGTCACGAATCTTTTTGCGGTCTGGGCTTGCTGTTCATAAATATCAGTCTGGGAAGCCCTTACCCCAAAAA
GCA
TTTGTGGAGGACTCAGTCGCCGAATTGAATGTATTGT


dot-bracket secondary structure
........(((.(((...(((.((..((((.(((((((((((((((.(((..((((((.((..................)).))))))..))).))))))
).)
))))))).)))))).))).))).)))...........



SIMILARITIES
miRBase fru-mir-129-1: 9e-24

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-129: 1e-26
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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