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Species belonging to selected taxon:

Canis lupus familiaris



ABOUT THIS RECORD

ID: MNEST006921
species: Canis lupus familiaris
miRNA family: mir-1842
source: miRNEST

Taxonomy by NCBI:
Canis lupus familiaris Canis lupus Canis Canidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGCTCTGCGAGGTCAGCTCA

miRNA*
 AGCAGGCCTGTCAGGGCGTTG

mismatches: 5
bulges: 0
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pre-miRNA
 CCAGCACCTGTGAGGTTGGTGGTGCTGACGTTGGCTCTGCGAGGTCAGCTCAAGGTGGGTCTGGATATTGAGCAGGCCTGTCAGGGCGTTGTCACCCACA
CCAGGAGCACGCAGCAGGT

dot-bracket secondary structure
.....((((((...(((((((....(((((...((((((..(((((.((((((.((........)).)))))).)))))..))))))..)))))....))
)))...)).....))))))


SIMILARITIES
miRBase cfa-mir-1842: 5e-28

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: cfa-mir-1842 from miRBase (MNEST026926)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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