ABOUT THIS RECORDspecies: Canis lupus familiaris
miRNA family: miR-133a
source: miRNEST
Taxonomy by NCBI:
Canis lupus familiaris Canis lupus Canis Canidae Caniformia Carnivora Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGTAAAATGGAACCAAAT miRNA* TTGGTCCCCTTCAACCAGCTG mismatches: 4 bulges: 0 |
pre-miRNA
CAAACTAGCAGCACTGCAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCAT
TGATTACTACAGGACAG
dot-bracket secondary structure
................((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))
))...............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAAACTAGCAGCACTGCAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTTGGTCCCCTTCAACCAGCTGTAGCTATGCAT
TGATTACTACAGGACAG
dot-bracket secondary structure
................((((((...((((.(((((((..((.((.((((((((............)))))))).)).))..))))))).))))...))))
))...............
SIMILARITIES| miRBase rno-mir-3582: 6e-46 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 3e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
