ABOUT THIS RECORDspecies: Physcomitrella patens
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Physcomitrella patens Physcomitrella Funariaceae Funariales Funariidae Bryopsida Moss Superclass V Bryophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGATTGAAGAGATCTCCGA miRNA* GAGTTTTTTTTTATCTTTTA mismatches: 4 bulges: 1 |
pre-miRNA
GTGCGCAATTTTTGGATTGAAGAGATCTCCGAGCGGTGGTGTGTGTGCATGTTGCGATTCGTTTGAGTTTTTTTTTATCTTTTAACCTGAAC
dot-bracket secondary structure
.............((((.(((((((.(((.((((((.........((((...))))..))))))))).))))))).))))............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTGCGCAATTTTTGGATTGAAGAGATCTCCGAGCGGTGGTGTGTGTGCATGTTGCGATTCGTTTGAGTTTTTTTTTATCTTTTAACCTGAAC
dot-bracket secondary structure
.............((((.(((((((.(((.((((((.........((((...))))..))))))))).))))))).))))............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
