ABOUT THIS RECORDspecies: Oncorhynchus mykiss
miRNA family: miR-2189
source: miRNEST
Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGTTTGAATCAGCTGTG miRNA* CAGCTGATTCAAATAAACAAG mismatches: 1 bulges: 0 |
pre-miRNA
CGGATGTTTGGGTTTTCTGCCCTAGTACTGCACAGCTGATTCAAATAAACAAGTCATCATCAAGCTTTGATTGTTTGAATCAGCTGTGTAGTGTTAGGTG
CAAAAACCAAAACATGC
dot-bracket secondary structure
...((((((.((((((.(((((((((((((((((((((((((((((((.((((............)))).)))))))))))))))))))))))))))).)
)))))))).))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CGGATGTTTGGGTTTTCTGCCCTAGTACTGCACAGCTGATTCAAATAAACAAGTCATCATCAAGCTTTGATTGTTTGAATCAGCTGTGTAGTGTTAGGTG
CAAAAACCAAAACATGC
dot-bracket secondary structure
...((((((.((((((.(((((((((((((((((((((((((((((((.((((............)))).)))))))))))))))))))))))))))).)
)))))))).))))))..
SIMILARITIES| miRBase dre-mir-2189: 0.0004 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
