miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Salmo salar, Oncorhynchus mykiss, Oncorhynchus tshawytscha, Oncorhynchus nerka, Thymallus thymallus, Coregonus clupeaformis, Salvelinus fontinalis



ABOUT THIS RECORD

ID: MNEST007197
species: Oncorhynchus mykiss
miRNA family: miR-2189
source: miRNEST

Taxonomy by NCBI:
Oncorhynchus mykiss Oncorhynchus Salmoninae Salmonidae Salmonoidei Salmoniformes Protacanthopterygii Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGTTTGAATCAGCTGTG

miRNA*
CAGCTGATTCAAATAAACAAG

mismatches: 1
bulges: 0

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pre-miRNA
CGGATGTTTGGGTTTTCTGCCCTAGTACTGCACAGCTGATTCAAATAAACAAGTCATCATCAAGCTTTGATTGTTTGAATCAGCTGTGTAGTGTTAGGTG
CAAAAACCAAAACATGC


dot-bracket secondary structure
...((((((.((((((.(((((((((((((((((((((((((((((((.((((............)))).)))))))))))))))))))))))))))).)
)))))))).))))))..



SIMILARITIES
miRBase dre-mir-2189: 0.0004

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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