ABOUT THIS RECORDspecies: Glycyrrhiza uralensis
miRNA family: MIR396
source: miRNEST
Taxonomy by NCBI:
Glycyrrhiza uralensis Glycyrrhiza Galegeae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TTCAATATCATATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATTCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTGCTCCCACCA
CACCTTGTTTTGCAGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACCATAACGGA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..((((((((.((...(((....)))...)).)))))...........
....)))...)))))))))).)))))))))))).)))))))).))))))).((.....)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCAATATCATATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATTCAAAGAGTTCCTTTGCATGCATGCCATGGCACTCTTGCTCCCACCA
CACCTTGTTTTGCAGTTCAATAAAGCTGTGGGAAGATACAGATAGGGTCAACCATAACGGA
dot-bracket secondary structure
............(((((((.((((((((.((((((((((((.((((((((((..((((((((.((...(((....)))...)).)))))...........
....)))...)))))))))).)))))))))))).)))))))).))))))).((.....)).
SIMILARITIES| miRBase gma-MIR396a: 1e-53 PMRD gma-miR396a: 1e-53 microPC miR396: 7e-34 | UniProt no hits RFAM MIR396: 0.00000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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