ABOUT THIS RECORDspecies: Pimephales promelas
miRNA family: miR-4104
source: miRNEST
Taxonomy by NCBI:
Pimephales promelas Pimephales Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGTGAAATTGTTGAATGACT miRNA* ATTTGTCAACAAATTCACTTT mismatches: 3 bulges: 2 |
pre-miRNA
CCTGCCAATAAGATTTGTCAACAAATTCACTTTAACATAAGAATAGATGTTGCATGCGCAGCGCCTTTTCAATGGACCGAATTAGACGTGAAATTGTTGA
ATGACTATGCAGAAC
dot-bracket secondary structure
.((((.....((.((..(((((((.(((((((((((((..(((.((.((((((....)))))).)).))).))).......))))).))))).)))))))
..))))..))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTGCCAATAAGATTTGTCAACAAATTCACTTTAACATAAGAATAGATGTTGCATGCGCAGCGCCTTTTCAATGGACCGAATTAGACGTGAAATTGTTGA
ATGACTATGCAGAAC
dot-bracket secondary structure
.((((.....((.((..(((((((.(((((((((((((..(((.((.((((((....)))))).)).))).))).......))))).))))).)))))))
..))))..))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
