ABOUT THIS RECORDspecies: Pimephales promelas
miRNA family: miR-137a
source: miRNEST
Taxonomy by NCBI:
Pimephales promelas Pimephales Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGGGTATTCTTGGGTGGATA miRNA* ATTGCTTAAGAATACGCGTAG mismatches: 4 bulges: 0 |
pre-miRNA
TTTCTAAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTC
dot-bracket secondary structure
.......(((((((((((((.(((.((((((((((((((.....(((((....)))))..)))))))))))))).))).)))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCTAAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTC
dot-bracket secondary structure
.......(((((((((((((.(((.((((((((((((((.....(((((....)))))..)))))))))))))).))).)))))))))))))......
SIMILARITIES| miRBase dre-mir-137-1: 5e-43 PMRD no hits microPC no hits | UniProt no hits RFAM mir-137: 4e-47 | most similar mature miRNAs |
Identical with: dre-mir-137-1 from miRBase (MNEST034305) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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