miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Danio rerio, Pimephales promelas, Cyprinus carpio, Misgurnus anguillicaudatus, Rutilus rutilus



ABOUT THIS RECORD

ID: MNEST007296
species: Pimephales promelas
miRNA family: miR-137a
source: miRNEST

Taxonomy by NCBI:
Pimephales promelas Pimephales Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACGGGTATTCTTGGGTGGATA

miRNA*
ATTGCTTAAGAATACGCGTAG

mismatches: 4
bulges: 0

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pre-miRNA
TTTCTAAGGCTCTCTTCGGTGACGGGTATTCTTGGGTGGATAATACGGCTCTCGTTGTTATTGCTTAAGAATACGCGTAGTTGAGGAGAGTCATTGTC

dot-bracket secondary structure
.......(((((((((((((.(((.((((((((((((((.....(((((....)))))..)))))))))))))).))).)))))))))))))......


SIMILARITIES
miRBase dre-mir-137-1: 5e-43

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-137: 4e-47
most similar mature miRNAs

Identical with: dre-mir-137-1 from miRBase (MNEST034305)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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