miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica, Lottia gigantea, Biomphalaria glabrata, Lymnaea stagnalis



ABOUT THIS RECORD

ID: MNEST007319
species: Aplysia californica
miRNA family: miR-2479
source: miRNEST

Taxonomy by NCBI:
Aplysia californica Aplysia Aplysiidae Aplysioidea Aplysiomorpha Opisthobranchia Euthyneura Heterobranchia Apogastropoda Orthogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGTTTGTATTGTTTTTGTTGT

miRNA*
 GACAGTCTTTGCAAGCTTG

mismatches: 4
bulges: 2
View larger
pre-miRNA
 AATGTCTCACATGACAGTCTTTGCAAGCTTGTCTTTGTGGATTAGTCTACTAGAGGATTTAGTCGGTTGGAGTGTGGATATACTATTATCATGTTTGCCA
TCAGTTGTGTCCGTTTGTTTGTCTTGATTTGAACTTTCCATTTATCAGTTTGTATTGTTTTTGTTGTTTGTTGTTT

dot-bracket secondary structure
((((...((.(((((((....((((((((.((....(((((..(((.((....(((((.(((.(((...((..((((((((.........))))))))..
))........))).)))...)))))....)).))).)))))..)).))))))))......))))))).)).)))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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