miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Aplysia californica



ABOUT THIS RECORD

ID: MNEST007319
species: Aplysia californica
miRNA family: miR-2479
source: miRNEST

Taxonomy by NCBI:
Aplysia californica Aplysia Aplysiidae Aplysioidea Aplysiomorpha Opisthobranchia Euthyneura Heterobranchia Apogastropoda Orthogastropoda Gastropoda Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGTTTGTATTGTTTTTGTTGT

miRNA*
GACAGTCTTTGCAAGCTTG

mismatches: 4
bulges: 2

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pre-miRNA
AATGTCTCACATGACAGTCTTTGCAAGCTTGTCTTTGTGGATTAGTCTACTAGAGGATTTAGTCGGTTGGAGTGTGGATATACTATTATCATGTTTGCCA
TCAGTTGTGTCCGTTTGTTTGTCTTGATTTGAACTTTCCATTTATCAGTTTGTATTGTTTTTGTTGTTTGTTGTTT


dot-bracket secondary structure
((((...((.(((((((....((((((((.((....(((((..(((.((....(((((.(((.(((...((..((((((((.........))))))))..
))........))).)))...)))))....)).))).)))))..)).))))))))......))))))).)).)))).



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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