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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST007361
species: Solanum tuberosum
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTC

miRNA*
 GGGATGTTGTTTGGCTCGACA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TTGTGTGTGGTGAGTTTGAGGGGGATGTTGTTTGGCTCGACACAATTACTCTCTTGTATGTGTTTATTTATTCGTCATCAAGATTGATGTTGATAACGAA
TAAATTAAACACAACAAGATATGTAAAAAGGGAGTAAAGGCGTCGGACCAGGCTTCATTCCTCTCAAACAATATTCTACTT

dot-bracket secondary structure
....(((.((((.((((((((((((((..((((((.(((((....((((((((((...(((((((((((((((((.(((((........))))).)))))
)))).))))))))(((.....)))...))))))))))....))))).))))))..))))))))))))))..)))).)))..


SIMILARITIES
miRBase zma-MIR166m: 0.000000009

PMRD zma-miR166m: 0.000000009

microPC miR166: 0.0001		UniProt no hits

RFAM mir-166: 0.0000002		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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