ABOUT THIS RECORDspecies: Solanum tuberosum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
GCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTACAT
GTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGA
dot-bracket secondary structure
..((((.(((((.((((((((((.((((((((((..(((((..((((((.(((((((((.((....)).)))).)))))(((((((.....))))))).)
)))))...)))))..))..)))))))).)))))))))).))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCTCTCATTCGCTTGGTGCAGGTCGGGACCTACCTCGCCGGCACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTACAT
GTTGTCTGTGGCGTAGTTTGGGTCCCGCCTTGCATCAACTGAATAGGAGA
dot-bracket secondary structure
..((((.(((((.((((((((((.((((((((((..(((((..((((((.(((((((((.((....)).)))).)))))(((((((.....))))))).)
)))))...)))))..))..)))))))).)))))))))).))))).)))).
SIMILARITIES| miRBase ptc-MIR168b: 0.0000005 PMRD stu-miR168: 5e-44 microPC miR168: 3e-67 | UniProt no hits RFAM MIR168: 0.000009 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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