miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Capsicum annuum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST007368
species: Solanum tuberosum
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Solanum tuberosum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 GTAGCATCATCAAGATTCATA

mismatches: 1
bulges: 0
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pre-miRNA
 AAACAATTAACAACAGTTGTTGTTTGCAGATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTATATATGTAGCTTTAATTGAAATGA
AAAATATAATATATCATGACCATCGTCTATTTATTTTAAAGTGAGAATCTTGATGATGCTGCATCAGCAATAAATAACTATCAGTGACAGAG

dot-bracket secondary structure
..............(((((((..((((.(((((((((((((((((((((.(((...(((((.((.((((..((((((((((((.................
........)))))).))))))...)))).)).)))))...))).))))))))))))))))))))).))))..))))))).............


SIMILARITIES
miRBase sly-MIR172b: 8e-59

PMRD sly-miR172b: 8e-59

microPC miR172: 0.000002		UniProt no hits

RFAM mir-172: 0.0000000000008		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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