ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGTCATTTTGTTTACAGG miRNA* TGTGAACATCTGGACCANGGGG mismatches: 5 bulges: 1 |
pre-miRNA
GTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGAAAGAGCTTCCTTTTACCACAATGCCGGACTGATATTTTATATGT
GTCTGACCCTTGTGAACATCTGGACCANGGGGACGAGGGT
dot-bracket secondary structure
...(((...((((.((((....((((((((((...((((((....)))))).(((((.....))))).((.....))...(((((..((((...))))..
)))))...))))))))))....))))..))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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GTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGAAAGAGCTTCCTTTTACCACAATGCCGGACTGATATTTTATATGT
GTCTGACCCTTGTGAACATCTGGACCANGGGGACGAGGGT
dot-bracket secondary structure
...(((...((((.((((....((((((((((...((((((....)))))).(((((.....))))).((.....))...(((((..((((...))))..
)))))...))))))))))....))))..))))..)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 9e-27 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 3e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
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