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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000746
species: Gossypium hirsutum
miRNA family: MIRf1215
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCTGGTCATTTTGTTTACAGG

miRNA*
TGTGAACATCTGGACCANGGGG

mismatches: 5
bulges: 1

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pre-miRNA
GTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGAAAGAGCTTCCTTTTACCACAATGCCGGACTGATATTTTATATGT
GTCTGACCCTTGTGAACATCTGGACCANGGGGACGAGGGT


dot-bracket secondary structure
...(((...((((.((((....((((((((((...((((((....)))))).(((((.....))))).((.....))...(((((..((((...))))..
)))))...))))))))))....))))..))))..)))...



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11908-akr: 9e-27

microPC no hits
UniProt sp|Q9LF38|EDL1_ARATH: 3e-17

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record





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