ABOUT THIS RECORDspecies: Schistosoma mansoni
miRNA family: miR-1196
source: miRNEST
Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCTGCCTGCCTCTGCCTC miRNA* GGTAGACCAGGCTGGCCTCG mismatches: 5 bulges: 1 |
pre-miRNA
GAGGCTGTCCTGGAACTCGATTGGTAGACCAGGCTGGCCTCGAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
dot-bracket secondary structure
......(((((((.(((((...((((((.(((((.((.(((.........))).)).)))))..))))))...))))).))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGGCTGTCCTGGAACTCGATTGGTAGACCAGGCTGGCCTCGAACTCACAGAGATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG
dot-bracket secondary structure
......(((((((.(((((...((((((.(((((.((.(((.........))).)).)))))..))))))...))))).))))))).....
SIMILARITIES| miRBase mmu-mir-3470a: 5e-18 PMRD no hits microPC no hits | UniProt no hits RFAM 7SK: 0.000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
