ABOUT THIS RECORDspecies: Schistosoma mansoni
miRNA family: miR-1957
source: miRNEST
Taxonomy by NCBI:
Schistosoma mansoni Schistosoma Schistosomatidae Schistosomatoidea Strigeidida Digenea Trematoda Platyhelminthes Acoelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGTGGTAGAGCATTCGACTG miRNA* GTTGAAGGTGTTGTGGTATGGTG mismatches: 4 bulges: 2 |
pre-miRNA
TGTAGTGTTTGTAGTTGAAGGTGTTGTGGTATGGTGTGGTGTTGGAGATGTGAACTTGTGACAGTGGCGAAATCGGGGGTATAGCTCAGTGGTAGAGCAT
TCGACTGCAGATCGAGA
dot-bracket secondary structure
......((((((((((((..(((((.((.(((...((.(((.....(((.((.(((......)))..))..))).....))).))...))).)).)))))
)))))))))))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTAGTGTTTGTAGTTGAAGGTGTTGTGGTATGGTGTGGTGTTGGAGATGTGAACTTGTGACAGTGGCGAAATCGGGGGTATAGCTCAGTGGTAGAGCAT
TCGACTGCAGATCGAGA
dot-bracket secondary structure
......((((((((((((..(((((.((.(((...((.(((.....(((.((.(((......)))..))..))).....))).))...))).)).)))))
)))))))))))).....
SIMILARITIES| miRBase no hits PMRD ath-miRf11039-akr: 0.0004 microPC no hits | UniProt no hits RFAM tRNA: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
