miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST007524
species: Vigna unguiculata
miRNA family: miR319c
source: miRNEST

Taxonomy by NCBI:
Vigna unguiculata Vigna Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GAGCTTTCTTCAGTCCACTCA

miRNA*
 CTTGGACTGAAGGGAGCTCCC

mismatches: 3
bulges: 0
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pre-miRNA
 GACCTTAACAAATGTAGGTAAGTGAGCTTTCTTCAGTCCACTCATAGGTGGCAGTAAGATTCAATTAGCTGCCGACTCATTCATCCAAATGCTGAGTAGT
GATACTCTTAAAGATACTCATCAAATGAGTGAATGATGCGGGAGACAAATTGATTCTTAAGTTTCCTGTACTTGGACTGAAGGGAGCTCCCTTTTCCTTT
CTATGTAAGAT

dot-bracket secondary structure
...((((....(((.(((.(((.(((((((((((((((((...(((((.(((..(((((.((((((..((.(((..((((((((.((..((.((((((.(
((.....)))....)))))).))..)).))))))))..))).))...)))))).))))).))).)))))...))))))))))))))))).)))..)))..
.))).))))..


SIMILARITIES
miRBase gma-MIR319a: 9e-62

PMRD gma-miR319a: 9e-62

microPC miR319: 1e-94		UniProt no hits

RFAM MIR159: 2e-44		most similar mature miRNAs

Identical with: miR319 from microPC (MNEST046740)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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