miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST007611
species: Litopenaeus vannamei
miRNA family: miR-548o
source: miRNEST

Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACAGAACTGCAGTTACTTTTT

miRNA*
 GAGGAACTGCATTTTTGGCA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 TCATCCTTTTTCTTTGCTTTTGCTGTGATGGACAGAACTGCAGTTACTTTTTCTGCAACCTCTTTCTTCTTTTCCTCTAGAGGTGCTGGGTATCCGTAAG
TGGATGGCTTTGCATTGGAGAGGAACTGCATTTTTGGCATTTTCAGTTCAGAGTTCAGCCCAATAAG

dot-bracket secondary structure
...............(((((.((((.((((..(((((.(((((((.(((((((.(((((((((...............))))))...((.(((((.....
.))))).)).)))...)))))))))))))).))))).))))..))))..))))).............


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|O88761|PSMD1_RAT: 0.00000001

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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