miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei



ABOUT THIS RECORD

ID: MNEST007611
species: Litopenaeus vannamei
miRNA family: miR-548o
source: miRNEST

Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ACAGAACTGCAGTTACTTTTT

miRNA*
GAGGAACTGCATTTTTGGCA

mismatches: 2
bulges: 1

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pre-miRNA
TCATCCTTTTTCTTTGCTTTTGCTGTGATGGACAGAACTGCAGTTACTTTTTCTGCAACCTCTTTCTTCTTTTCCTCTAGAGGTGCTGGGTATCCGTAAG
TGGATGGCTTTGCATTGGAGAGGAACTGCATTTTTGGCATTTTCAGTTCAGAGTTCAGCCCAATAAG


dot-bracket secondary structure
...............(((((.((((.((((..(((((.(((((((.(((((((.(((((((((...............))))))...((.(((((.....
.))))).)).)))...)))))))))))))).))))).))))..))))..))))).............



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|O88761|PSMD1_RAT: 0.00000001

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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