ABOUT THIS RECORDspecies: Litopenaeus vannamei
miRNA family: miR-548o
source: miRNEST
Taxonomy by NCBI:
Litopenaeus vannamei Litopenaeus Penaeidae Penaeoidea Dendrobranchiata Decapoda Eucarida Eumalacostraca Malacostraca Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAGAACTGCAGTTACTTTTT miRNA* GAGGAACTGCATTTTTGGCA mismatches: 2 bulges: 1 |
pre-miRNA
TCATCCTTTTTCTTTGCTTTTGCTGTGATGGACAGAACTGCAGTTACTTTTTCTGCAACCTCTTTCTTCTTTTCCTCTAGAGGTGCTGGGTATCCGTAAG
TGGATGGCTTTGCATTGGAGAGGAACTGCATTTTTGGCATTTTCAGTTCAGAGTTCAGCCCAATAAG
dot-bracket secondary structure
...............(((((.((((.((((..(((((.(((((((.(((((((.(((((((((...............))))))...((.(((((.....
.))))).)).)))...)))))))))))))).))))).))))..))))..))))).............
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATCCTTTTTCTTTGCTTTTGCTGTGATGGACAGAACTGCAGTTACTTTTTCTGCAACCTCTTTCTTCTTTTCCTCTAGAGGTGCTGGGTATCCGTAAG
TGGATGGCTTTGCATTGGAGAGGAACTGCATTTTTGGCATTTTCAGTTCAGAGTTCAGCCCAATAAG
dot-bracket secondary structure
...............(((((.((((.((((..(((((.(((((((.(((((((.(((((((((...............))))))...((.(((((.....
.))))).)).)))...)))))))))))))).))))).))))..))))..))))).............
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O88761|PSMD1_RAT: 0.00000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
