ABOUT THIS RECORDspecies: Trichosurus vulpecula
miRNA family: miR-21
source: miRNEST
Taxonomy by NCBI:
Trichosurus vulpecula Trichosurus Phalangeridae Diprotodontia Metatheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGAGCAGTCGAAGGGCTGTA miRNA* CAGATTTTCATAGCTTAAGA mismatches: 5 bulges: 1 |
pre-miRNA
TTCGGAGCAGAAAGAGCAGTCGAAGGGCTGTACTTCTGGTTGGCCTTTGTGACTCGGGGAAGACGCTCCTTTTTGTCAGGCTGTTAACGGGACTTTACAG
ATTTTCATAGCTTAAGACAGTATCA
dot-bracket secondary structure
(((......))).((((.((.((((..(((((.(((((..(((((....((((..(((((......)))))...)))))))))....)))))...)))))
.)))).)).))))..((.....)).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCGGAGCAGAAAGAGCAGTCGAAGGGCTGTACTTCTGGTTGGCCTTTGTGACTCGGGGAAGACGCTCCTTTTTGTCAGGCTGTTAACGGGACTTTACAG
ATTTTCATAGCTTAAGACAGTATCA
dot-bracket secondary structure
(((......))).((((.((.((((..(((((.(((((..(((((....((((..(((((......)))))...)))))))))....)))))...)))))
.)))).)).))))..((.....)).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9Y5M8|SRPRB_HUMAN: 0.0000000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
