ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: miR172c
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGCATCATCAAGATTCACA miRNA* AGAATCCTGATGATGCTGCAG mismatches: 3 bulges: 0 |
pre-miRNA
GATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGA
TTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATT
dot-bracket secondary structure
..............(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))
))).))))).)))))))))).)))))))))..))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGA
TTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATT
dot-bracket secondary structure
..............(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))
))).))))).)))))))))).)))))))))..))))))).............
SIMILARITIES| miRBase ghr-MIR172: 1e-66 PMRD ath-miRf11051-akr: 0.0000000001 microPC miR172: 0.0001 | UniProt no hits RFAM mir-172: 0.000000009 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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