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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii



ABOUT THIS RECORD

ID: MNEST000780
species: Gossypium hirsutum
miRNA family: miR172c
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGAGCATCATCAAGATTCACA

miRNA*
AGAATCCTGATGATGCTGCAG

mismatches: 3
bulges: 0

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pre-miRNA
GATGATTGCACAACAGTCACTGTTTGCTGTTGGAGCATCATCAAGATTCACAATTTTAGGGTTCTTTTTTGATTGATTTGATCAATCAGCCTTTTTATGA
TTGAGAATCCTGATGATGCTGCAGTGGCAATAAGTGGCTAAATATTCCAATT


dot-bracket secondary structure
..............(((((((..(((((((((.((((((((((.(((((.(((((..(((((.......((((((((...))))))))))))).....))
))).))))).)))))))))).)))))))))..))))))).............



SIMILARITIES
miRBase ghr-MIR172: 1e-66

PMRD ath-miRf11051-akr: 0.0000000001

microPC miR172: 0.0001
UniProt no hits

RFAM mir-172: 0.000000009
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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