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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST000787
species: Gossypium hirsutum
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCAAAGGGATCGCATTGATC

miRNA*
 TCATGCGATCCCTTCGGAAT

mismatches: 1
bulges: 1
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pre-miRNA
 TTCCTAGTGCAGGTGGAGAGCTCCAAAGGGATCGCATTGATCTAATGTTGATGATGGGCTTCCTTGAAAACCTTAACGAATTAATTATTGATTTTTGTTG
ATTCAGTTCAGTACCCATTGGATCATGCGATCCCTTCGGAATTTTCCATCGCTAGCTCTA

dot-bracket secondary structure
...(((((...(((((((((.(((.((((((((((((.(((((((((.......((((((((..((((((..((((.((.....)).))))))))))..)
)...)))))).....))))))))))))))))))))).))).)))))))))))))).....


SIMILARITIES
miRBase ghr-MIR393: 5e-75

PMRD ghr-miR393: 4e-63

microPC miR393: 0.0000001		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: ghr-miR393 from PMRD (MNEST048501)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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