miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000787
species: Gossypium hirsutum
miRNA family: MIR393
source: miRNEST

Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCAAAGGGATCGCATTGATC

miRNA*
TCATGCGATCCCTTCGGAAT

mismatches: 1
bulges: 1

View larger
pre-miRNA
TTCCTAGTGCAGGTGGAGAGCTCCAAAGGGATCGCATTGATCTAATGTTGATGATGGGCTTCCTTGAAAACCTTAACGAATTAATTATTGATTTTTGTTG
ATTCAGTTCAGTACCCATTGGATCATGCGATCCCTTCGGAATTTTCCATCGCTAGCTCTA


dot-bracket secondary structure
...(((((...(((((((((.(((.((((((((((((.(((((((((.......((((((((..((((((..((((.((.....)).))))))))))..)
)...)))))).....))))))))))))))))))))).))).)))))))))))))).....



SIMILARITIES
miRBase ghr-MIR393: 5e-75

PMRD ghr-miR393: 4e-63

microPC miR393: 0.0000001
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: ghr-miR393 from PMRD (MNEST048501)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;