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Species belonging to selected taxon:

Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Theobroma cacao



ABOUT THIS RECORD

ID: MNEST000812
species: Gossypium raimondii
miRNA family: MIR398
source: miRNEST

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCACCCCT

miRNA*
 GGGTGCCACCTAAGAACACAGG

mismatches: 1
bulges: 2
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pre-miRNA
 TCACCCACTTAGCCAAGATGGTTTACCCCAGAGGGGTGCCACCTAAGAACACAGGTCATCCCTTAACCAAATAGCTTGTGTTCTCAGGTCACCCCTTTGG
GGTACATATATCTTCGCCTATTTTCT

dot-bracket secondary structure
...........((.((((((...(((((((((((((((..((((.(((((((((((.((...........)).))))))))))).)))))))))))))))
))))....)))))).)).........


SIMILARITIES
miRBase gra-MIR398: 5e-56

PMRD ghr-miR398: 3e-32

microPC miR398: 3e-32		UniProt no hits

RFAM MIR398: 0.0000005		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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