miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Eucalyptus globulus, Eucalyptus gunnii, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, Limnanthes alba, Paullinia cupana var. sorbilis, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Theobroma cacao, Tropaeolum majus, Carica papaya, Citrus clementina, Arabidopsis thaliana, Brassica oleracea

ABOUT THIS RECORD

ID: MNEST000813
species: Gossypium raimondii
miRNA family: MIR3476
source: miRNEST

Taxonomy by NCBI:
Gossypium raimondii Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGAACTGGGTTTGTTGGCTGC

miRNA*
AGCCAACAACATCAGTTCTAA

mismatches: 4
bulges: 0

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pre-miRNA
TGATGCAGTTCAGTATTCCAGTATCTTGATTTGAACTGGGTTTGTTGGCTGCTGATCTGCTTTTTTGAAGCAGATATCAAATCTAGTTAATAAAAACACT
TTTCAGGAGCCAACAACATCAGTTCTAACCAGGACTGGGCTGAGATTTACAAGCTC

dot-bracket secondary structure
........((((((...((((..(((((.((.(((((((..(((((((((.((((((((((((...))))))))..........................
..)))).)))))))))..))))))).)).)))))))))))))))............

SIMILARITIES

miRBase ghr-MIR3476: 6e-56

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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