miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Vitis shuttleworthii, Vitis vinifera



ABOUT THIS RECORD

ID: MNEST008316
species: Vitis vinifera
miRNA family: MIR1171
source: miRNEST

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGAGTGGAGTGGAATGGAAT

miRNA*
 TCCATTCCCACATTTCAAC

mismatches: 4
bulges: 2
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pre-miRNA
 TTCAAGAAAAGTGGAGTGGAGTGGAATGGAATTGGGGGTTGCCAGGGTTCCATCTGCAATGGAAAGACCTTAAAAAGATTTTCTTTTGCGAAACAAATTT
TGAAAATATTTTTTGCGTACATTATCCATTCCCACATTTCAACGGATTGGC

dot-bracket secondary structure
.((((......(((((((....((((((((..((.....(((.(((.((((((.....))))))...))).(((((.((((((.((((.....))))...
.)))))).))))).)))..))...))))))))..))))))).....)))).


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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