ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIRf469
source: miRNEST
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGTAATCCCAGCACTTTGG miRNA* GAGTAGCTGGGACTAGAGGCA mismatches: 4 bulges: 0 |
pre-miRNA
ACCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCACACATCACCACACTTGGCTAGTATTTAAATTTTTCTGTAGAAGTCCAGGCGCAGTGGCTCATGCCTG
TAATCCCAGCACTTTGGGAGGCCGAA
dot-bracket secondary structure
)..((.((((((((((..(((((((.((.(((((....((((....(((((((..(((..((....))..)))..)).)))))....))))....))))).
)).)))))))..)))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
ACCTCAGCCTCCTGAGTAGCTGGGACTAGAGGCACACATCACCACACTTGGCTAGTATTTAAATTTTTCTGTAGAAGTCCAGGCGCAGTGGCTCATGCCTG
TAATCCCAGCACTTTGGGAGGCCGAA
dot-bracket secondary structure
)..((.((((((((((..(((((((.((.(((((....((((....(((((((..(((..((....))..)))..)).)))))....))))....))))).
)).)))))))..)))))))))).)).
SIMILARITIES| miRBase hsa-mir-619: 1.0E-13 PMRD ptc-miRf12412-akr: 3.0E-11 microPC no hits | UniProt no hits RFAM PMetazoa_SRP: 2.0E-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
