ABOUT THIS RECORDspecies: Acyrthosiphon pisum
miRNA family: mir-3015
source: miRNEST
Taxonomy by NCBI:
Acyrthosiphon pisum Acyrthosiphon Macrosiphini Aphidinae Aphididae Aphidoidea Aphidomorpha Aphidiformes Sternorrhyncha Hemiptera Paraneoptera Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCAGACATTGTAAGAACGGCC miRNA* CTGGTTCTTACGACCTCCGGTT mismatches: 3 bulges: 1 |
pre-miRNA
AGACTTAGGCTGGTTCTTACGACCTCCGGTTAAAGTTAACCGACACTTAACCGGCGGAATTCTGCCAGTAATAAAATCTGTTATCATCCGGTTAGCGTAA
ACCGACACTTTACCAGACATTGTAAGAACGGCCCTTAAT
dot-bracket secondary structure
.......(((((.(((((((((..((.(((.(((((((((.((...(((((.(((((....))))).))..)))..)).)))).....(((((......)
))))..)))))))).))..))))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGACTTAGGCTGGTTCTTACGACCTCCGGTTAAAGTTAACCGACACTTAACCGGCGGAATTCTGCCAGTAATAAAATCTGTTATCATCCGGTTAGCGTAA
ACCGACACTTTACCAGACATTGTAAGAACGGCCCTTAAT
dot-bracket secondary structure
.......(((((.(((((((((..((.(((.(((((((((.((...(((((.(((((....))))).))..)))..)).)))).....(((((......)
))))..)))))))).))..))))))))))))))......
SIMILARITIES| miRBase api-mir-3015a-1: 0.00000000000003 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
