ABOUT THIS RECORDspecies: Culex quinquefasciatus
miRNA family: miR-1816
source: miRNEST
Taxonomy by NCBI:
Culex quinquefasciatus Culex pipiens complex Culex Culex Culicini Culicinae Culicidae Culicoidea Culicimorpha Nematocera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTGGTTTTGTTGTTTTGTTT miRNA* ACAAAAGGACGATGTTCACACTT mismatches: 3 bulges: 2 |
pre-miRNA
ATTTTACAAATGTCGGGTCGGGTTGGTTTTGTTGTTTTGTTTGTTTTCTTATGAAGGATGTCGGAACAAAAGGACGATGTTCACACTTTTTTGCTTTGCA
TTGCTT
dot-bracket secondary structure
........(((((.((((.(((((((..(((((.((((((((...(((((...))))).....)))))))).)))))...))).))))....)))).)))
))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTTACAAATGTCGGGTCGGGTTGGTTTTGTTGTTTTGTTTGTTTTCTTATGAAGGATGTCGGAACAAAAGGACGATGTTCACACTTTTTTGCTTTGCA
TTGCTT
dot-bracket secondary structure
........(((((.((((.(((((((..(((((.((((((((...(((((...))))).....)))))))).)))))...))).))))....)))).)))
))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
