ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: miR1143
source: miRNEST
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGACGTCCCCTTACGGGAAT miRNA* GCCCGAAGGGGACGTCCACT mismatches: 4 bulges: 1 |
pre-miRNA
CACGAGGAAGGAGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACAATAAATAAATTGTATGTAAACCCCTTCGGGCAACTAAAGTTTAT
CGCAGTATATAAATATCGGCAGTTGTGTGGCAACTGCTCCTAAAATTCATTTGCCCGAAGGGGACGTCCACT
dot-bracket secondary structure
............((((((((((((.((((...((.(((.((((.((((((.(((((((......)))))))((((((...((.((....)).))))))))
.((..(((((((..........))))))))).)))))).)))).))).))...))))))))))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CACGAGGAAGGAGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACAATAAATAAATTGTATGTAAACCCCTTCGGGCAACTAAAGTTTAT
CGCAGTATATAAATATCGGCAGTTGTGTGGCAACTGCTCCTAAAATTCATTTGCCCGAAGGGGACGTCCACT
dot-bracket secondary structure
............((((((((((((.((((...((.(((.((((.((((((.(((((((......)))))))((((((...((.((....)).))))))))
.((..(((((((..........))))))))).)))))).)))).))).))...))))))))))))))))...
SIMILARITIES| miRBase cre-MIR1143: 3e-18 PMRD cre-miR1143: 3e-18 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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