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Species belonging to selected taxon:

Volvox carteri, Chlamydomonas reinhardtii



ABOUT THIS RECORD

ID: MNEST008517
species: Chlamydomonas reinhardtii
miRNA family: miR1143
source: miRNEST

Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGACGTCCCCTTACGGGAAT

miRNA*
GCCCGAAGGGGACGTCCACT

mismatches: 4
bulges: 1

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pre-miRNA
CACGAGGAAGGAGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACAATAAATAAATTGTATGTAAACCCCTTCGGGCAACTAAAGTTTAT
CGCAGTATATAAATATCGGCAGTTGTGTGGCAACTGCTCCTAAAATTCATTTGCCCGAAGGGGACGTCCACT


dot-bracket secondary structure
............((((((((((((.((((...((.(((.((((.((((((.(((((((......)))))))((((((...((.((....)).))))))))
.((..(((((((..........))))))))).)))))).)))).))).))...))))))))))))))))...



SIMILARITIES
miRBase cre-MIR1143: 3e-18

PMRD cre-miR1143: 3e-18

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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