ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: miR-450a
source: miRNEST
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGGTACATTTTGCAGAAA miRNA* TCTAATGATGATCCAGT mismatches: 3 bulges: 2 |
pre-miRNA
GATTGGGTACATTTTGCAGAAAAATCAATGTTGTATTTCTTTTTCACTTTATTTACATCACATTTACACTTCTTTGCCATTACAATTTTCCTTTATTTCA
TGTTGTTTTGAGCCTTTTCTAGCTCATGAAGAAGATCATAAAACTGTTTAAGTGATAATTCCATCACCGTTGTTTCTAATGATGATCCAGT
dot-bracket secondary structure
.(((((((.((((....(((((...(((((.((.......((.((((((.....(((...........((((((((..(..(((((..............
.)))))..)((((........)))).))))))))..........)))..)))))).))......)).))))))))))...)))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GATTGGGTACATTTTGCAGAAAAATCAATGTTGTATTTCTTTTTCACTTTATTTACATCACATTTACACTTCTTTGCCATTACAATTTTCCTTTATTTCA
TGTTGTTTTGAGCCTTTTCTAGCTCATGAAGAAGATCATAAAACTGTTTAAGTGATAATTCCATCACCGTTGTTTCTAATGATGATCCAGT
dot-bracket secondary structure
.(((((((.((((....(((((...(((((.((.......((.((((((.....(((...........((((((((..(..(((((..............
.)))))..)((((........)))).))))))))..........)))..)))))).))......)).))))))))))...)))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
