ABOUT THIS RECORDspecies: Daphnia pulex
miRNA family: mir-34
source: miRNEST
Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAGTGTGGCTAGCTGGTTG miRNA* GCCACTATCCAAACTGTCCA mismatches: 2 bulges: 1 |
pre-miRNA
GCAAAAAGTGTATTGATGGTTGGCAGTGTGGCTAGCTGGTTGTGAAATATTTAATTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACGA
TAT
dot-bracket secondary structure
.......(((((((((((((.((((((.(((.(((.((((((((....((((....)))).))))))))))).))).)))))).))))))))).))))..
...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAAAAAGTGTATTGATGGTTGGCAGTGTGGCTAGCTGGTTGTGAAATATTTAATTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACGA
TAT
dot-bracket secondary structure
.......(((((((((((((.((((((.(((.(((.((((((((....((((....)))).))))))))))).))).)))))).))))))))).))))..
...
SIMILARITIES| miRBase dpu-mir-34: 2e-45 PMRD no hits microPC no hits | UniProt no hits RFAM mir-449: 0.0003 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
