miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Litopenaeus vannamei, Lepeophtheirus salmonis, Daphnia pulex, Petrolisthes cinctipes, Penaeus monodon, Artemia franciscana, Caligus rogercresseyi, Homarus americanus, Eriocheir sinensis, Carcinus maenas, Lernaeocera branchialis, Caligus clemensi, Daphnia magna, Gammarus pulex, Calanus finmarchicus, Callinectes sapidus, Fenneropenaeus chinensis



ABOUT THIS RECORD

ID: MNEST008594
species: Daphnia pulex
miRNA family: mir-34
source: miRNEST

Taxonomy by NCBI:
Daphnia pulex Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGCAGTGTGGCTAGCTGGTTG

miRNA*
 GCCACTATCCAAACTGTCCA

mismatches: 2
bulges: 1
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pre-miRNA
 GCAAAAAGTGTATTGATGGTTGGCAGTGTGGCTAGCTGGTTGTGAAATATTTAATTGAATCCACAGCCACTATCCAAACTGTCCACTGTCGATGACACGA
TAT

dot-bracket secondary structure
.......(((((((((((((.((((((.(((.(((.((((((((....((((....)))).))))))))))).))).)))))).))))))))).))))..
...


SIMILARITIES
miRBase dpu-mir-34: 2e-45

PMRD no hits

microPC no hits		UniProt no hits

RFAM mir-449: 0.0003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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